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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs1411478 1 rs2331903 chr1:180950869 STX6 chr1:180913175-180992046:- -0.58 -5.74 4.28E-7 Progressive supranuclear palsy
UVM cis rs2564921 1 rs2336723 chr3:53106047 RFT1 chr3:53122503-53164470:- -0.36 -5.27 2.32E-6 Height
UVM cis rs2028299 1 rs2351706 chr15:90384115 AP3S2 chr15:90373832-90456222:- -0.74 -6.17 8.4E-8 Type 2 diabetes
UVM cis rs2028299 1 rs2351707 chr15:90384045 AP3S2 chr15:90373832-90456222:- -0.74 -6.17 8.4E-8 Type 2 diabetes
UVM cis rs4660306 1 rs2356559 chr1:45981512 CCDC163P chr1:45960581-45965646:- -0.78 -8.11 5.76E-11 Homocysteine levels
UVM cis rs4660306 1 rs2356561 chr1:45980862 CCDC163P chr1:45960581-45965646:- -0.79 -8.89 3.22E-12 Homocysteine levels
UVM cis rs2239557 1 rs2358628 chr14:74631757 LIN52 chr14:74551656-74667117:+ -0.43 -5.07 4.86E-6 Common traits (Other)
UVM cis rs2239557 1 rs2358633 chr14:74647418 LIN52 chr14:74551656-74667117:+ -0.44 -5.65 5.92E-7 Common traits (Other)
UVM cis rs9876781 1 rs2362450 chr3:48461313 TREX1 chr3:48501186-48509043:+ -0.4 -5.1 4.38E-6 Longevity
UVM cis rs9876781 1 rs2362452 chr3:48418214 TREX1 chr3:48501186-48509043:+ 0.4 4.98 6.56E-6 Longevity
UVM cis rs2367725 1 rs2367725 chr1:44215828 DPH2 chr1:44435653-44439044:+ -0.29 -4.62 2.38E-5 Aging (time to event)
UVM cis rs10935120 1 rs2370578 chr3:134199612 ANAPC13 chr3:134196547-134204865:- 0.47 7.01 3.68E-9 Height
UVM cis rs10935120 1 rs2370641 chr3:134222161 ANAPC13 chr3:134196547-134204865:- 0.46 7.06 3.0E-9 Height
UVM cis rs10935120 1 rs2370642 chr3:134222136 ANAPC13 chr3:134196547-134204865:- 0.46 7.06 3.0E-9 Height
UVM cis rs10935120 1 rs2373865 chr3:134291556 ANAPC13 chr3:134196547-134204865:- -0.45 -6.73 1.03E-8 Height